By curating a current list of publications by HypOxystation users, HypOxygen is striving to provide a resource for researchers interested in investigating their cells under truly authentic, physiological culture conditions. Low oxygen, be it hypoxia as a pathological parameter or physioxia as the natural condition for cells, both in vivo and in vitro, is reliably created in the HypOxystation. We hope the science community will find these papers, which are searchable and linked to the original papers, to be useful in elucidating the importance of hypoxic cell culture in their own labs.

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Research Field Authors Title of Paper Citation/Journal Publication Date Country
of Origin
Link to Publication
Hypoxia General Kim et al. TNF-α induces human neural progenitor cell survival after oxygen–glucose deprivation by activating the NF-κB pathway Exp Mol Med. 2018 Apr; 50(4): 14. 2018 KOREA Click for
Article
Cancer Niu et al. BRD7 inhibits the Warburg effect and tumor progression through inactivation of HIF1α/LDHA axis in breast cancer Cell Death Dis. 2018 May; 9(5): 519. 2018 CHINA Click for
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Pathology Brunt et al. The orphan germinant receptor protein GerXAO (but not GerX3b) is essential for L-alanine induced germination in Clostridium botulinum Group II Sci Rep. 2018; 8: 7060. 2018 UNITED KINGDOM Click for
Article
Pathology Wei et al. Protective Effects of Bifidobacterial Strains Against Toxigenic Clostridium difficile Front Microbiol. 2018; 9: 888. 2018 CHINA Click for
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Microbiology Glanville et al. RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization PLoS Pathog. 2018 May; 14(5): e1007052. 2018 UNITED STATES of AMERICA Click for
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Pathology Connerton et al. The effect of the timing of exposure to Campylobacter jejuni on the gut microbiome and inflammatory responses of broiler chickens Microbiome. 2018; 6: 88. 2018 UNITED KINGDOM Click for
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Microbiology Govinden et al. Inhibition of sialidase activity and cellular invasion by the bacterial vaginosis pathogen Gardnerella vaginalis Arch Microbiol. 2018; 200(7): 1129–1133. 2018 UNITED KINGDOM Click for
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Pathology Riley et al. High Prevalence of Toxigenic and Nontoxigenic Clostridium difficile Strains in Malaysia J Clin Microbiol. 2018 Jun; 56(6): e00170-18. 2018 AUSTRALIA Click for
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Dental Nabert‐Georgi et al. Influence of oral bacteria on adhesion of Streptococcus mutans and Streptococcus sanguinis to dental materials Clin Exp Dent Res. 2018 Jun; 4(3): 72–77. 2018 GERMANY Click for
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Pathology Kers et al. OG716: Designing a fit-for-purpose lantibiotic for the treatment of Clostridium difficile infections PLoS One. 2018; 13(6): e0197467. 2018 UNITED STATES of AMERICA Click for
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Cancer Chhipa et al. AMP Kinase Promotes Glioblastoma Bioenergetics and Tumor Growth Nat Cell Biol. Author manuscript; available in PMC 2018 Dec 18. 2018 UNITED STATES of AMERICA Click for
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Pathology Card et al. Identification of a New Antimicrobial Resistance Gene Provides Fresh Insights Into Pleuromutilin Resistance in Brachyspira hyodysenteriae, Aetiological Agent of Swine Dysentery Front Microbiol. 2018; 9: 1183. 2018 UNITED KINGDOM Click for
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Microbiology Le Maréchal, et al. Detection of Clostridium botulinum group III in environmental samples from farms by real-time PCR using four commercial DNA extraction kits BMC Res Notes. 2018; 11: 441. 2018 FRANCE Click for
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Dental Zhou et al. Evaluating Streptococcus mutans Strain Dependent Characteristics in a Polymicrobial Biofilm Community Front Microbiol. 2018; 9: 1498. 2018 UNITED KINGDOM Click for
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Pathology Horvat and Rupnik Interactions Between Clostridioides difficile and Fecal Microbiota in in Vitro Batch Model: Growth, Sporulation, and Microbiota Changes Front Microbiol. 2018; 9: 1633. 2018 SLOVENIA Click for
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Microbiology Phothichaisri et al. Characterization of Bacteriophages Infecting Clinical Isolates of Clostridium difficile Front Microbiol. 2018; 9: 1701. 2018 THAILAND Click for
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Microbiology Sikorra et al. Botulinum Neurotoxin F Subtypes Cleaving the VAMP-2 Q58–K59 Peptide Bond Exhibit Unique Catalytic Properties and Substrate Specificities Toxins (Basel). 2018 Aug; 10(8): 311. 2018 GERMANY Click for
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Pathology Vallières et al. Novel Combinations of Agents Targeting Translation That Synergistically Inhibit Fungal Pathogens Front Microbiol. 2018; 9: 2355. 2018 UNITED KINGDOM Click for
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Pathology Gao et al. Structural properties of a haemophore facilitate targeted elimination of the pathogen Porphyromonas gingivalis Nat Commun. 2018; 9: 4097. 2018 AUSTRALIA Click for
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Pathology Dunn et al. Genomic epidemiology of clinical Campylobacter spp. at a single health trust site Microb Genom. 2018 Oct; 4(10): e000227. 2018 UNITED KINGDOM Click for
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Dental Ledder et al. Oral Microbiota in Severe Early Childhood Caries in Thai Children and Their Families: A Pilot Study Front Microbiol. 2018; 9: 2420. 2018 UNITED KINGDOM Click for
Article
Microbiology Fontes et al. Effect of Pufa Substrates on Fatty Acid Profile of Bifidobacterium breve Ncimb 702258 and CLA/CLNA Production in Commercial Semi-Skimmed Milk Sci Rep. 2018; 8: 15591. 2018 PORTUGAL Click for
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Hypoxia General Yan et al. Extrusion of Dissolved Oxygen by Exopolysaccharide From Leuconostoc mesenteroides and Its Implications in Relief of the Oxygen Stress Front Microbiol. 2018; 9: 2467. 2018 CHINA Click for
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Pathology van der Hooft et al. Unexpected differential metabolic responses of Campylobacter jejuni to the abundant presence of glutamate and fucose Metabolomics. 2018; 14(11): 144. 2018 NETHERLANDS Click for
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Hypoxia General Mao et al. An agent-based model for drug-radiation interactions in the tumour microenvironment: Hypoxia-activated prodrug SN30000 in multicellular tumour spheroids PLoS Comput Biol. 2018 Oct; 14(10): e1006469. 2018 NEW ZEALAND Click for
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Microbiology Viñas et al. Receptor-Ligand Interaction Mediates Targeting of Endothelial Colony Forming Cell-derived Exosomes to the Kidney after Ischemic Injury Sci Rep. 2018; 8: 16320. 2018 CANADA Click for
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Microbiology Dembek et al. Peptidoglycan degradation machinery in Clostridium difficile forespore engulfment Mol Microbiol. 2018 Nov; 110(3): 390–410. 2018 UNITED KINGDOM Click for
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Cancer Hermann et al. Magnetic Resonance Imaging for Characterization of a Chick Embryo Model of Cancer Cell Metastases Mol Imaging. 2018 Jan-Dec; 17: 1536012118809585. 2018 UNITED KINGDOM Click for
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Microbiology Crost et al. Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates Front Microbiol. 2018; 9: 2558. 2018 UNITED KINGDOM Click for
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Pathology Ternan et al. Increased sporulation underpins adaptation of Clostridium difficile strain 630 to a biologically–relevant faecal environment, with implications for pathogenicity Sci Rep. 2018; 8: 16691. 2018 UNITED KINGDOM Click for
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Microbiology Liu et al. Muscular proteomic profiling of deep pressure ulcers reveals myoprotective role of JAK2 in ischemia and reperfusion injury Am J Transl Res. 2018; 10(11): 3413–3429. 2018 CHINA Click for
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Microbiology Liu et al. Clostridium acetobutylicum grows vegetatively in a biofilm rich in heteropolysaccharides and cytoplasmic proteins Biotechnol Biofuels. 2018; 11: 315. 2018 CHINA Click for
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Microbiology Liu et al. Influence of CO2 Degassing on the Microbial Community in a Dry Mofette Field in Hartoušov, Czech Republic (Western Eger Rift) Front Microbiol. 2018; 9: 2787. 2018 GERMANY Click for
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Cancer Wohlrab et al. The Association Between Ascorbate and the Hypoxia-Inducible Factors in Human Renal Cell Carcinoma Requires a Functional Von Hippel-Lindau Protein Front Oncol. 2018; 8: 574. 2018 NEW ZEALAND Click for
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Microbiology Deng et al. Bacteroides fragilis Prevents Clostridium difficile Infection in a Mouse Model by Restoring Gut Barrier and Microbiome Regulation Front Microbiol. 2018; 9: 2976. 2018 CHINA Click for
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Cancer Cao et al. miR-18a reactivates the Epstein-Barr virus through defective DNA damage response and promotes genomic instability in EBV-associated lymphomas BMC Cancer. 2018; 18: 1293. 2018 CHINA Click for
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Pathology Wei et al. Prevalence, genotype and antimicrobial resistance of Clostridium difficile isolates from healthy pets in Eastern China BMC Infect Dis. 2019; 19: 46. 2019 CHINA Click for
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Cancer Jamieson et al. Evofosfamide for the treatment of human papillomavirus-negative head and neck squamous cell carcinoma JCI Insight. 2018 Aug 23; 3(16): e122204. 2018 NEW ZEALAND Click for
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Microbiology Mao et al. Effects of Different Doses of Fructooligosaccharides (FOS) on the Composition of Mice Fecal Microbiota, Especially the Bifidobacterium Composition Nutrients. 2018 Aug; 10(8): 1105. 2018 CHINA Click for
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Cancer Al-Mutawa et al. Effects of hypoxic preconditioning on neuroblastoma tumour oxygenation and metabolic signature in a chick embryo model Biosci Rep. 2018 Aug 31; 38(4): BSR20180185. 2018 UNITED KINGDOM Click for
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Pathology Harris et al. Variant O89 O-Antigen of E. coli Is Associated With Group 1 Capsule Loci and Multidrug Resistance Front Microbiol. 2018; 9: 2026. 2018 UNITED KINGDOM Click for
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Microbiology Moon and Narbad Construction of a Bioluminescent Labelling Plasmid Vector for Bifidobacteria Korean J Food Sci Anim Resour. 2018 Aug; 38(4): 816–822. 2018 KOREA Click for
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Pathology Sima et al. A Novel Natural Antimicrobial Can Reduce the in vitro and in vivo Pathogenicity of T6SS Positive Campylobacter jejuni and Campylobacter coli Chicken Isolates Front Microbiol. 2018; 9: 2139. 2018 UNITED KINGDOM Click for
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Dental Loannidis et al. Quantification by SIFT-MS of volatile compounds produced by the action of sodium hypochlorite on a model system of infected root canal content PLoS One. 2018; 13(9): e0198649. 2018 UNITED KINGDOM Click for
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Hypoxia General Wang et al. Effects of four weeks intermittent hypoxia intervention on glucose homeostasis, insulin sensitivity, GLUT4 translocation, insulin receptor phosphorylation, and Akt activity in skeletal muscle of obese mice with type 2 diabetes PLoS One. 2018; 13(9): e0203551. 2018 CHINA Click for
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Pathology Wang et al. Behavior of Salmonella Typhimurium on Fresh Strawberries Under Different Storage Temperatures and Wash Treatments Front Microbiol. 2018; 9: 2091. 2018 CHINA Click for
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Cancer Eales et al. Verteporfin selectively kills hypoxic glioma cells through iron-binding and increased production of reactive oxygen species Sci Rep. 2018; 8: 14358. 2018 UNITED KINGDOM Click for
Article
Hypoxia General Ortiz-Barahona et al. Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction Nucleic Acids Res. 2010 Apr; 38(7): 2332–2345. 2010 SPAIN Click for
Article
Hypoxia General Pescador et al. Hypoxia Promotes Glycogen Accumulation through Hypoxia Inducible Factor (HIF)-Mediated Induction of Glycogen Synthase 1 PLoS One. 2010; 5(3): e9644. 2010 SPAIN Click for
Article
Pathology Muth et al. Hypoxia-induced down-regulation of microRNA-449a/b impairs control over targeted SERPINE1 (PAI-1) mRNA - a mechanism involved in SERPINE1 (PAI-1) overexpression J Transl Med. 2011; 9: 24. 2011 GERMANY Click for
Article
Hypoxia General Tiana et al A role for insulator elements in the regulation of gene expression response to hypoxia Nucleic Acids Res. 2012 Mar; 40(5): 1916–1927. 2012 SPAIN Click for
Article
Pathology Weijts et al. E2F7 and E2F8 promote angiogenesis through transcriptional activation of VEGFA in cooperation with HIF1 EMBO J. 2012 Oct 3; 31(19): 3871–3884. 2012 NETHERLANDS Click for
Article
Pathology Fazius et al. The fungal α-aminoadipate pathway for lysine biosynthesis requires two enzymes of the aconitase family for the isomerization of homocitrate to homoisocitrate Mol Microbiol. 2012 Dec; 86(6): 1508–1530. 2012 GERMANY Click for
Article
Pathology Fu et al. Phenotypic assays identify a small molecule modulator of the unfolded protein response with anti-diabetic activity Sci Transl Med. Author manuscript; available in PMC 2016 Oct 13. 2016 UNITED STATES of AMERICA Click for
Article
Cancer Ho et al. Systemic reprograming of translation efficiencies on oxygen stimulus Cell Rep. Author manuscript; available in PMC 2016 Mar 9. 2016 UNITED STATES of AMERICA Click for
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Cancer Gammoh et al. Suppression of autophagy impedes glioblastoma development and induces senescence Autophagy. 2016; 12(9): 1431–1439. 2016 UNITED KINGDOM Click for
Article
Dental Zhou et al. Caries-resistant bonding layer in dentin Sci Rep. 2016; 6: 32740. 2016 CHINA Click for
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Pathology Zeng et al. Contribution of TLR4 signaling in intermittent hypoxia-mediated atherosclerosis progression J Transl Med. 2018; 16: 106. 2018 CHINA Click for
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Microbiology Audas et al. Adaptation to Stressors by Systemic Protein Amyloidogenesis Dev Cell. Author manuscript; available in PMC 2017 Oct 24. 2016 UNITED STATES of AMERICA Click for
Article
Cancer Leszczynska, et al. Preclinical testing of an Atr inhibitor demonstrates improved response to standard therapies for esophageal cancer Radiother Oncol. 2016 Nov; 121(2): 232–238. 2016 UNITED KINGDOM Click for
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Cancer O'Connor et al. CYP450 Enzymes Effect Oxygen-Dependent Reduction of Azide-Based Fluorogenic Dyes ACS Cent Sci. 2017 Jan 25; 3(1): 20–30. 2017 UNITED KINGDOM Click for
Article
Cancer Labiano et al. CD69 is a direct HIF-1α target gene in hypoxia as a mechanism enhancing expression on tumor-infiltrating T lymphocytes Oncoimmunology. 2017; 6(4): e1283468. 2017 SPAIN Click for
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Cancer Wadkin et al. CD151 supports VCAM-1-mediated lymphocyte adhesion to liver endothelium and is upregulated in chronic liver disease and hepatocellular carcinoma Am J Physiol Gastrointest Liver Physiol. 2017 Aug 1; 313(2): G138–G149. 2017 UNITED KINGDOM Click for
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Cancer Poupard et al. Assessment of Heparanase-Mediated Angiogenesis Using Microvascular Endothelial Cells: Identification of λ-Carrageenan Derivative as a Potent Anti Angiogenic Agent Mar Drugs. 2017 May; 15(5): 134. 2017 FRANCE Click for
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Pathology De Luna et al. Hypoxia triggers IFN-I production in muscle: Implications in dermatomyositis Sci Rep. 2017; 7: 8595. 2017 SPAIN Click for
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Cancer Dobrynin et al. KDM4A regulates HIF-1 levels through H3K9me3 Sci Rep. 2017; 7: 11094. 2017 UNITED KINGDOM Click for
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Cancer Kelly et al. Hypoxia activates cadherin-22 synthesis via eIF4E2 to drive cancer cell migration, invasion and adhesion Oncogene. Author manuscript; available in PMC 2018 Feb 6. 2018 CANADA Click for
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Hypoxia General Tiana et al The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia Nucleic Acids Res. 2018 Jan 9; 46(1): 120–133. 2018 SPAIN Click for
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Cancer Krawczyk et al. Injury induced expression of caveolar proteins in human kidney tubules - role of megakaryoblastic leukemia 1 BMC Nephrol. 2017; 18: 320. 2017 SWEDEN Click for
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Microbiology Ho et al. Oxygen-Sensitive Remodeling of Central Carbon Metabolism by Archaic eIF5B Cell Rep. Author manuscript; available in PMC 2018 Jan 26. 2018 UNITED STATES of AMERICA Click for
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Cancer Paredes et al. Poldip2 is an oxygen-sensitive protein that controls PDH and αKGDH lipoylation and activation to support metabolic adaptation in hypoxia and cancer Proc Natl Acad Sci U S A. 2018 Feb 20; 115(8): 1789–1794. 2018 UNITED STATES of AMERICA Click for
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Pathology Drozd et al. Contribution of TAT System Translocated PhoX to Campylobacter jejuni Phosphate Metabolism and Resilience to Environmental Stresses PLoS One. 2011; 6(10): e26336. 2011 UNITED STATES of AMERICA Click for
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Pathology Malde et al. Functional characterization of exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GPPA) of Campylobacter jejuni Virulence. 2014 May 15; 5(4): 521–533. 2014 UNITED STATES of AMERICA Click for
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Pathology Yang et al. Synthesis of conjugated linoleic acid by the linoleate isomerase complex in food-derived lactobacilli J Appl Microbiol. Author manuscript; available in PMC 2015 Jan 26. 2014 CHINA Click for
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Microbiology Paukner et al. Expression, purification, and characterization of galactose oxidase of Fusarium sambucinum in E. coli Protein Expr Purif. 2015 Apr; 108: 73–79. 2015 AUSTRIA Click for
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Cancer Chandrashekhar et al. Transducer like proteins of Campylobacter jejuni 81-176: role in chemotaxis and colonization of the chicken gastrointestinal tract Front Cell Infect Microbiol. 2015; 5: 46. 2015 UNITED STATES of AMERICA Click for
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Pathology Hardy et al. Unravelling the Bacterial Vaginosis-Associated Biofilm: A Multiplex Gardnerella vaginalis and Atopobium vaginae Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes PLoS One. 2015; 10(8): e0136658. 2015 BELGIUM Click for
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Cancer Stivarou et al. The complex metabolic network gearing the G1/S transition in leukemic stem cells: Hints to a rational use of antineoplastic agents Oncotarget. 2015 Oct 13; 6(31): 31985–31996. 2015 ITALY Click for
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Cancer Yu et al. Berberine may rescue Fusobacterium nucleatum-induced colorectal tumorigenesis by modulating the tumor microenvironment Oncotarget. 2015 Oct 13; 6(31): 32013–32026. 2015 CHINA Click for
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Pathology Dreher-Lesnick et al. Development of Phage Lysin LysA2 for Use in Improved Purity Assays for Live Biotherapeutic Products Viruses. 2015 Dec; 7(12): 6675–6688. 2015 UNITED STATES of AMERICA Click for
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Microbiology Willing et al. Increased toxin expression in a Clostridium difficile mfd mutant BMC Microbiol. 2015; 15: 280. 2015 UNITED KINGDOM Click for
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Pathology Taguchi et al. Involvement of an Skp-Like Protein, PGN_0300, in the Type IX Secretion System of Porphyromonas gingivalis Infect Immun. 2016 Jan; 84(1): 230–240. 2016 JAPAN Click for
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Dental Ooi & Tan Reduced Glutathione Mediates Resistance to H2S Toxicity in Oral Streptococci Appl Environ Microbiol. 2016 Apr 1; 82(7): 2078–2085. 2016 SINGAPORE Click for
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Pathology Kumar et al. Novel Anti-Campylobacter Compounds Identified Using High Throughput Screening of a Pre-selected Enriched Small Molecules Library Front Microbiol. 2016; 7: 405. 2016 UNITED STATES of AMERICA Click for
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Pathology Benítez-Páez et al. Genome Structure of the Symbiont Bifidobacterium pseudocatenulatum CECT 7765 and Gene Expression Profiling in Response to Lactulose-Derived Oligosaccharides Front Microbiol. 2016; 7: 624. 2016 SPAIN Click for
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Microbiology Browne et al. Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation Nature. Author manuscript; available in PMC 2016 Nov 4. 2016 UNITED KINGDOM Click for
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Microbiology Han et al. Effects of Incubation Conditions on Cr(VI) Reduction by c-type Cytochromes in Intact Shewanella oneidensis MR-1 Cells Front Microbiol. 2016; 7: 746. 2016 CHINA Click for
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Pathology Rodriguez-Palacios et al. Subboiling Moist Heat Favors the Selection of Enteric Pathogen Clostridium difficile PCR Ribotype 078 Spores in Food Can J Infect Dis Med Microbiol. 2016; 2016: 1462405. 2016 UNITED STATES of AMERICA Click for
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Pathology Hofbauer et al. Chemistry and Molecular Dynamics Simulations of Heme b-HemQ and Coproheme-HemQ Biochemistry. 2016 Sep 27; 55(38): 5398–5412. 2016 AUSTRIA Click for
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Pathology Chen et al. Effects of Glucose and Starch on Lactate Production by Newly Isolated Streptococcus bovis S1 from Saanen Goats Appl Environ Microbiol. 2016 Oct 1; 82(19): 5982–5989. 2016 CHINA Click for
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Microbiology Dewachter et al. Reactive oxygen species do not contribute to ObgE*-mediated programmed cell death Sci Rep. 2016; 6: 33723. 2016 BELGIUM Click for
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Pathology Chen at al. Relative significances of pH and substrate starch level to roles of Streptococcus bovis S1 in rumen acidosis AMB Express. 2016; 6: 80. 2016 CHINA Click for
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Microbiology Brugger et al. Electrochemical characterization of the pyranose 2-oxidase variant N593C shows a complete loss of the oxidase function with full preservation of substrate (dehydrogenase) activity Phys Chem Chem Phys. 2016 Dec 21; 18(47): 32072–32077 2016 AUSTRIA Click for
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Cancer Cheloni et al. The Leukemic Stem Cell Niche: Adaptation to “Hypoxia” versus Oncogene Addiction Stem Cells Int. 2017; 2017: 4979474. 2017 ITALY Click for
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Microbiology Jugder et al. A bacterial chloroform reductive dehalogenase: purification and biochemical characterization Microb Biotechnol. 2017 Nov; 10(6): 1640–1648. 2017 AUSTRALIA Click for
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Cancer Yu et al. Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy Cell. Author manuscript; available in PMC 2018 Jan 13. 2017 CHINA Click for
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Microbiology Vallières and Avery The Candidate Antimalarial Drug MMV665909 Causes Oxygen-Dependent mRNA Mistranslation and Synergizes with Quinoline-Derived Antimalarials Antimicrob Agents Chemother. 2017 Sep; 61(9): e00459-17. 2017 UNITED KINGDOM Click for
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Microbiology Benítez-Páez et al. The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides Front Cell Infect Microbiol. 2017; 7: 383. 2017 SPAIN Click for
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Microbiology Clauwers et al. Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219 Sci Rep. 2017; 7: 15426. 2017 BELGIUM Click for
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Microbiology Bag et al. Complete Genome Sequence of Collinsella aerofaciens Isolated from the Gut of a Healthy Indian Subject Genome Announc. 2017 Nov; 5(47): e01361-17. 2017 INDIA Click for
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