By curating a current list of publications by HypOxystation users, HypOxygen is striving to provide a resource for researchers interested in investigating their cells under truly authentic, physiological culture conditions. Low oxygen, be it hypoxia as a pathological parameter or physioxia as the natural condition for cells, both in vivo and in vitro, is reliably created in the HypOxystation. We hope the science community will find these papers, which are searchable and linked to the original papers, to be useful in elucidating the importance of hypoxic cell culture in their own labs.

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Research Field Authors Title of Paper Citation/Journal Publication Date Country
of Origin
Link to Publication
Hypoxia General Ortiz-Barahona et al. Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction Nucleic Acids Res. 2010 Apr; 38(7): 2332–2345. 2010 SPAIN Click for
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Hypoxia General Pescador et al. Hypoxia Promotes Glycogen Accumulation through Hypoxia Inducible Factor (HIF)-Mediated Induction of Glycogen Synthase 1 PLoS One. 2010; 5(3): e9644. 2010 SPAIN Click for
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Pathology Muth et al. Hypoxia-induced down-regulation of microRNA-449a/b impairs control over targeted SERPINE1 (PAI-1) mRNA - a mechanism involved in SERPINE1 (PAI-1) overexpression J Transl Med. 2011; 9: 24. 2011 GERMANY Click for
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Hypoxia General Tiana et al A role for insulator elements in the regulation of gene expression response to hypoxia Nucleic Acids Res. 2012 Mar; 40(5): 1916–1927. 2012 SPAIN Click for
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Pathology Weijts et al. E2F7 and E2F8 promote angiogenesis through transcriptional activation of VEGFA in cooperation with HIF1 EMBO J. 2012 Oct 3; 31(19): 3871–3884. 2012 NETHERLANDS Click for
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Pathology Fazius et al. The fungal α-aminoadipate pathway for lysine biosynthesis requires two enzymes of the aconitase family for the isomerization of homocitrate to homoisocitrate Mol Microbiol. 2012 Dec; 86(6): 1508–1530. 2012 GERMANY Click for
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Pathology Fu et al. Phenotypic assays identify a small molecule modulator of the unfolded protein response with anti-diabetic activity Sci Transl Med. Author manuscript; available in PMC 2016 Oct 13. 2016 UNITED STATES of AMERICA Click for
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Cancer Ho et al. Systemic reprograming of translation efficiencies on oxygen stimulus Cell Rep. Author manuscript; available in PMC 2016 Mar 9. 2016 UNITED STATES of AMERICA Click for
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Cancer Gammoh et al. Suppression of autophagy impedes glioblastoma development and induces senescence Autophagy. 2016; 12(9): 1431–1439. 2016 UNITED KINGDOM Click for
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Dental Zhou et al. Caries-resistant bonding layer in dentin Sci Rep. 2016; 6: 32740. 2016 CHINA Click for
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Pathology Zeng et al. Contribution of TLR4 signaling in intermittent hypoxia-mediated atherosclerosis progression J Transl Med. 2018; 16: 106. 2018 CHINA Click for
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Microbiology Audas et al. Adaptation to Stressors by Systemic Protein Amyloidogenesis Dev Cell. Author manuscript; available in PMC 2017 Oct 24. 2016 UNITED STATES of AMERICA Click for
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Cancer Leszczynska, et al. Preclinical testing of an Atr inhibitor demonstrates improved response to standard therapies for esophageal cancer Radiother Oncol. 2016 Nov; 121(2): 232–238. 2016 UNITED KINGDOM Click for
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Cancer O'Connor et al. CYP450 Enzymes Effect Oxygen-Dependent Reduction of Azide-Based Fluorogenic Dyes ACS Cent Sci. 2017 Jan 25; 3(1): 20–30. 2017 UNITED KINGDOM Click for
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Cancer Labiano et al. CD69 is a direct HIF-1α target gene in hypoxia as a mechanism enhancing expression on tumor-infiltrating T lymphocytes Oncoimmunology. 2017; 6(4): e1283468. 2017 SPAIN Click for
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Cancer Wadkin et al. CD151 supports VCAM-1-mediated lymphocyte adhesion to liver endothelium and is upregulated in chronic liver disease and hepatocellular carcinoma Am J Physiol Gastrointest Liver Physiol. 2017 Aug 1; 313(2): G138–G149. 2017 UNITED KINGDOM Click for
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Cancer Poupard et al. Assessment of Heparanase-Mediated Angiogenesis Using Microvascular Endothelial Cells: Identification of λ-Carrageenan Derivative as a Potent Anti Angiogenic Agent Mar Drugs. 2017 May; 15(5): 134. 2017 FRANCE Click for
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Pathology De Luna et al. Hypoxia triggers IFN-I production in muscle: Implications in dermatomyositis Sci Rep. 2017; 7: 8595. 2017 SPAIN Click for
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Cancer Dobrynin et al. KDM4A regulates HIF-1 levels through H3K9me3 Sci Rep. 2017; 7: 11094. 2017 UNITED KINGDOM Click for
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Cancer Kelly et al. Hypoxia activates cadherin-22 synthesis via eIF4E2 to drive cancer cell migration, invasion and adhesion Oncogene. Author manuscript; available in PMC 2018 Feb 6. 2018 CANADA Click for
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Hypoxia General Tiana et al The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia Nucleic Acids Res. 2018 Jan 9; 46(1): 120–133. 2018 SPAIN Click for
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Cancer Krawczyk et al. Injury induced expression of caveolar proteins in human kidney tubules - role of megakaryoblastic leukemia 1 BMC Nephrol. 2017; 18: 320. 2017 SWEDEN Click for
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Microbiology Ho et al. Oxygen-Sensitive Remodeling of Central Carbon Metabolism by Archaic eIF5B Cell Rep. Author manuscript; available in PMC 2018 Jan 26. 2018 UNITED STATES of AMERICA Click for
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Cancer Paredes et al. Poldip2 is an oxygen-sensitive protein that controls PDH and αKGDH lipoylation and activation to support metabolic adaptation in hypoxia and cancer Proc Natl Acad Sci U S A. 2018 Feb 20; 115(8): 1789–1794. 2018 UNITED STATES of AMERICA Click for
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Pathology Drozd et al. Contribution of TAT System Translocated PhoX to Campylobacter jejuni Phosphate Metabolism and Resilience to Environmental Stresses PLoS One. 2011; 6(10): e26336. 2011 UNITED STATES of AMERICA Click for
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Pathology Malde et al. Functional characterization of exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GPPA) of Campylobacter jejuni Virulence. 2014 May 15; 5(4): 521–533. 2014 UNITED STATES of AMERICA Click for
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Pathology Yang et al. Synthesis of conjugated linoleic acid by the linoleate isomerase complex in food-derived lactobacilli J Appl Microbiol. Author manuscript; available in PMC 2015 Jan 26. 2014 CHINA Click for
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Microbiology Paukner et al. Expression, purification, and characterization of galactose oxidase of Fusarium sambucinum in E. coli Protein Expr Purif. 2015 Apr; 108: 73–79. 2015 AUSTRIA Click for
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Cancer Chandrashekhar et al. Transducer like proteins of Campylobacter jejuni 81-176: role in chemotaxis and colonization of the chicken gastrointestinal tract Front Cell Infect Microbiol. 2015; 5: 46. 2015 UNITED STATES of AMERICA Click for
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Pathology Hardy et al. Unravelling the Bacterial Vaginosis-Associated Biofilm: A Multiplex Gardnerella vaginalis and Atopobium vaginae Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes PLoS One. 2015; 10(8): e0136658. 2015 BELGIUM Click for
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Cancer Stivarou et al. The complex metabolic network gearing the G1/S transition in leukemic stem cells: Hints to a rational use of antineoplastic agents Oncotarget. 2015 Oct 13; 6(31): 31985–31996. 2015 ITALY Click for
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Cancer Yu et al. Berberine may rescue Fusobacterium nucleatum-induced colorectal tumorigenesis by modulating the tumor microenvironment Oncotarget. 2015 Oct 13; 6(31): 32013–32026. 2015 CHINA Click for
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Pathology Dreher-Lesnick et al. Development of Phage Lysin LysA2 for Use in Improved Purity Assays for Live Biotherapeutic Products Viruses. 2015 Dec; 7(12): 6675–6688. 2015 UNITED STATES of AMERICA Click for
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Microbiology Willing et al. Increased toxin expression in a Clostridium difficile mfd mutant BMC Microbiol. 2015; 15: 280. 2015 UNITED KINGDOM Click for
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Pathology Taguchi et al. Involvement of an Skp-Like Protein, PGN_0300, in the Type IX Secretion System of Porphyromonas gingivalis Infect Immun. 2016 Jan; 84(1): 230–240. 2016 JAPAN Click for
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Dental Ooi & Tan Reduced Glutathione Mediates Resistance to H2S Toxicity in Oral Streptococci Appl Environ Microbiol. 2016 Apr 1; 82(7): 2078–2085. 2016 SINGAPORE Click for
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Pathology Kumar et al. Novel Anti-Campylobacter Compounds Identified Using High Throughput Screening of a Pre-selected Enriched Small Molecules Library Front Microbiol. 2016; 7: 405. 2016 UNITED STATES of AMERICA Click for
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Pathology Benítez-Páez et al. Genome Structure of the Symbiont Bifidobacterium pseudocatenulatum CECT 7765 and Gene Expression Profiling in Response to Lactulose-Derived Oligosaccharides Front Microbiol. 2016; 7: 624. 2016 SPAIN Click for
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Microbiology Browne et al. Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation Nature. Author manuscript; available in PMC 2016 Nov 4. 2016 UNITED KINGDOM Click for
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Microbiology Han et al. Effects of Incubation Conditions on Cr(VI) Reduction by c-type Cytochromes in Intact Shewanella oneidensis MR-1 Cells Front Microbiol. 2016; 7: 746. 2016 CHINA Click for
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Pathology Rodriguez-Palacios et al. Subboiling Moist Heat Favors the Selection of Enteric Pathogen Clostridium difficile PCR Ribotype 078 Spores in Food Can J Infect Dis Med Microbiol. 2016; 2016: 1462405. 2016 UNITED STATES of AMERICA Click for
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Pathology Hofbauer et al. Chemistry and Molecular Dynamics Simulations of Heme b-HemQ and Coproheme-HemQ Biochemistry. 2016 Sep 27; 55(38): 5398–5412. 2016 AUSTRIA Click for
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Pathology Chen et al. Effects of Glucose and Starch on Lactate Production by Newly Isolated Streptococcus bovis S1 from Saanen Goats Appl Environ Microbiol. 2016 Oct 1; 82(19): 5982–5989. 2016 CHINA Click for
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Microbiology Dewachter et al. Reactive oxygen species do not contribute to ObgE*-mediated programmed cell death Sci Rep. 2016; 6: 33723. 2016 BELGIUM Click for
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Pathology Chen at al. Relative significances of pH and substrate starch level to roles of Streptococcus bovis S1 in rumen acidosis AMB Express. 2016; 6: 80. 2016 CHINA Click for
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Microbiology Brugger et al. Electrochemical characterization of the pyranose 2-oxidase variant N593C shows a complete loss of the oxidase function with full preservation of substrate (dehydrogenase) activity Phys Chem Chem Phys. 2016 Dec 21; 18(47): 32072–32077 2016 AUSTRIA Click for
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Cancer Cheloni et al. The Leukemic Stem Cell Niche: Adaptation to “Hypoxia” versus Oncogene Addiction Stem Cells Int. 2017; 2017: 4979474. 2017 ITALY Click for
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Microbiology Jugder et al. A bacterial chloroform reductive dehalogenase: purification and biochemical characterization Microb Biotechnol. 2017 Nov; 10(6): 1640–1648. 2017 AUSTRALIA Click for
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Cancer Yu et al. Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy Cell. Author manuscript; available in PMC 2018 Jan 13. 2017 CHINA Click for
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Microbiology Vallières and Avery The Candidate Antimalarial Drug MMV665909 Causes Oxygen-Dependent mRNA Mistranslation and Synergizes with Quinoline-Derived Antimalarials Antimicrob Agents Chemother. 2017 Sep; 61(9): e00459-17. 2017 UNITED KINGDOM Click for
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Microbiology Benítez-Páez et al. The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides Front Cell Infect Microbiol. 2017; 7: 383. 2017 SPAIN Click for
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Microbiology Clauwers et al. Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219 Sci Rep. 2017; 7: 15426. 2017 BELGIUM Click for
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Microbiology Bag et al. Complete Genome Sequence of Collinsella aerofaciens Isolated from the Gut of a Healthy Indian Subject Genome Announc. 2017 Nov; 5(47): e01361-17. 2017 INDIA Click for
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Microbiology Kracher et al. Active-site copper reduction promotes substrate binding of fungal lytic polysaccharide monooxygenase and reduces stability J Biol Chem. 2018 Feb 2; 293(5): 1676–1687. 2018 AUSTRIA Click for
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Microbiology Breslmayr et al. A fast and sensitive activity assay for lytic polysaccharide monooxygenase Biotechnol Biofuels. 2018; 11: 79. 2018 AUSTRIA Click for
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Pathology Yang et al. Lauric Acid Is an Inhibitor of Clostridium difficile Growth in Vitro and Reduces Inflammation in a Mouse Infection Model Front Microbiol. 2017; 8: 2635. 2017 TAIWAN Click for
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Pathology Wilkinson et al. Updating the genomic taxonomy and epidemiology of Campylobacter hyointestinalis Sci Rep. 2018; 8: 2393. 2018 NEW ZEALAND Click for
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Dental Deng et al. Worlds Apart – Transcriptome Profiles of Key Oral Microbes in the Periodontal Pocket Compared to Single Laboratory Culture Reflect Synergistic Interactions Front Microbiol. 2018; 9: 124. 2018 GERMANY Click for
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Microbiology Venkidusamy et al. Petrophilic, Fe(III) Reducing Exoelectrogen Citrobacter sp. KVM11, Isolated From Hydrocarbon Fed Microbial Electrochemical Remediation Systems Front Microbiol. 2018; 9: 349. 2018 AUSTRALIA Click for
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Pathology Ricci and Piddock Accumulation of Norfloxacin by Bacteroides fragilis Antimicrob Agents Chemother. 2000 Sep; 44(9): 2361–2366. 2000 UNITED KINGDOM Click for
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Dental O'Brien-Simpson et al. Role of RgpA, RgpB, and Kgp Proteinases in Virulence of Porphyromonas gingivalis W50 in a Murine Lesion Model Infect Immun. 2001 Dec; 69(12): 7527–7534. 2001 AUSTRALIA Click for
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Dental Downes et al. Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum ‘Synergistetes’ isolated from the human oral cavity Int J Syst Evol Microbiol. 2009 May; 59(Pt 5): 972–980. 2009 UNITED KINGDOM Click for
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Pathology Cartman and Minton A mariner-Based Transposon System for In Vivo Random Mutagenesis of Clostridium difficile Appl Environ Microbiol. 2010 Feb; 76(4): 1103–1109. 2010 UNITED KINGDOM Click for
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Hypoxia General Hamilton-Brehm et al. Caldicellulosiruptor obsidiansis sp. nov., an Anaerobic, Extremely Thermophilic, Cellulolytic Bacterium Isolated from Obsidian Pool, Yellowstone National Park Appl Environ Microbiol. 2010 Feb; 76(4): 1014–1020. 2010 UNITED STATES of AMERICA Click for
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Pathology Cartman et al. Precise Manipulation of the Clostridium difficile Chromosome Reveals a Lack of Association between the tcdC Genotype and Toxin Production Appl Environ Microbiol. 2012 Jul; 78(13): 4683–4690. 2012 UNITED KINGDOM Click for
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Microbiology Yu et al. The principal fucosylated oligosaccharides of human milk exhibit prebiotic properties on cultured infant microbiota Glycobiology. 2013 Feb; 23(2): 169–177. 2013 UNITED STATES of AMERICA Click for
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Dental Zhu et al. Porphyromonas gingivalis and Treponema denticola Synergistic Polymicrobial Biofilm Development PLoS One. 2013; 8(8): e71727. 2013 AUSTRALIA Click for
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Neurology Murk et al. The antagonistic modulation of Arp2/3 activity by N-WASP, WAVE2 and PICK1 defines dynamic changes in astrocyte morphology J Cell Sci. 2013 Sep 1; 126(17): 3873–3883. 2013 UNITED KINGDOM Click for
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Microbiology Yu et al. Utilization of major fucosylated and sialylated human milk oligosaccharides by isolated human gut microbes Glycobiology. 2013 Nov; 23(11): 1281–1292. 2013 UNITED STATES of AMERICA Click for
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Microbiology Rivière et al. The Ability of Bifidobacteria To Degrade Arabinoxylan Oligosaccharide Constituents and Derived Oligosaccharides Is Strain Dependent Appl Environ Microbiol. 2014 Jan; 80(1): 204–217. 2014 BELGIUM Click for
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Microbiology Chan et al. Scarless Genome Editing and Stable Inducible Expression Vectors for Geobacter sulfurreducens Appl Environ Microbiol. 2015 Oct; 81(20): 7178–7186. 2015 UNITED STATES of AMERICA Click for
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Pathology Walter et al. The SOS Response Master Regulator LexA Is Associated with Sporulation, Motility and Biofilm Formation in Clostridium difficile PLoS One. 2015; 10(12): e0144763. 2015 SLOVENIA Click for
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Pathology C. M. Dozois Construction of Nontoxigenic Mutants of Nonproteolytic Clostridium botulinum NCTC 11219 by Insertional Mutagenesis and Gene Replacement Appl Environ Microbiol. 2016 May 15; 82(10): 3100–3108. 2016 BELGIUM Click for
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Microbiology Yang et al. Mining bifidobacteria from the neonatal gastrointestinal tract for conjugated linolenic acid production Bioengineered. 2017; 8(3): 232–238. 2017 CHINA Click for
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Microbiology Nerandzic and Donskey A Quaternary Ammonium Disinfectant Containing Germinants Reduces Clostridium difficile Spores on Surfaces by Inducing Susceptibility to Environmental Stressors Open Forum Infect Dis. 2016 Oct; 3(4): ofw196. 2016 UNITED STATES of AMERICA Click for
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Pathology Studer et al. Functional Intestinal Bile Acid 7α-Dehydroxylation by Clostridium scindens Associated with Protection from Clostridium difficile Infection in a Gnotobiotic Mouse Model Front Cell Infect Microbiol. 2016; 6: 191. 2016 SWITZERLAND Click for
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Microbiology Liew et al. Metabolic engineering of Clostridium autoethanogenum for selective alcohol production Metab Eng. 2017 Mar; 40: 104–114. 2017 UNITED KINGDOM Click for
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Microbiology Guo et al. SENP3-mediated deSUMOylation of Drp1 facilitates interaction with Mff to promote cell death Sci Rep. 2017; 7: 43811. 2017 UNITED KINGDOM Click for
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Hypoxia General Shenoy et al. Anaerobic Bacteria in Clinical Specimens – Frequent, But a Neglected Lot: A Five Year Experience at a Tertiary Care Hospital J Clin Diagn Res. 2017 Jul; 11(7): DC44–DC48. 2017 INDIA Click for
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Pathology Feng at al. A human stool-derived Bilophila wadsworthia strain caused systemic inflammation in specific-pathogen-free mice Gut Pathog. 2017; 9: 59. 2017 CHINA Click for
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Pathology Nerandzic and Donskey Sensitizing Clostridium difficile Spores with Germinants on Skin and Environmental Surfaces Represents a New Strategy for Reducing Spores via Ambient Mechanisms Pathog Immun. Author manuscript; available in PMC 2017 Nov 20. 2017 UNITED STATES of AMERICA Click for
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Dental Endo et al. Quantitative and qualitative analysis of microorganisms in root-filled teeth with persistent infection: Monitoring of the endodontic retreatment Eur J Dent. 2013 Jul-Sep; 7(3): 302–309. 2013 BRAZIL Click for
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Pathology Sellars et al. Growth of Campylobacter jejuni Supported by Respiration of Fumarate, Nitrate, Nitrite, Trimethylamine-N-Oxide, or Dimethyl Sulfoxide Requires Oxygen J Bacteriol. 2002 Aug; 184(15): 4187–4196. 2002 UNITED KINGDOM Click for
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Microbiology Lindstrom et al. Thermal Inactivation of Nonproteolytic Clostridium botulinum Type E Spores in Model Fish Media and in Vacuum-Packaged Hot-Smoked Fish Products Appl Environ Microbiol. 2003 Jul; 69(7): 4029–4036. 2003 UNITED KINGDOM Click for
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Dental Pathirana et al. Flow Cytometric Analysis of Adherence of Porphyromonas gingivalis to Oral Epithelial Cells Infect Immun. 2007 May; 75(5): 2484–2492. 2007 AUSTRALIA Click for
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Dental Stephan et al. Activity of Pradofloxacin against Porphyromonas and Prevotella spp. Implicated in Periodontal Disease in Dogs: Susceptibility Test Data from a European Multicenter Study Antimicrob Agents Chemother. 2008 Jun; 52(6): 2149–2155. 2008 UNITED KINGDOM Click for
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Microbiology Rollefson et al. Identification of Genes Involved in Biofilm Formation and Respiration via Mini-Himar Transposon Mutagenesis of Geobacter sulfurreducens J Bacteriol. 2009 Jul; 191(13): 4207–4217. 2009 UNITED STATES of AMERICA Click for
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Dental Downes et al. Prevotella saccharolytica sp. nov., isolated from the human oral cavity Int J Syst Evol Microbiol. 2010 Oct; 60(10): 2458–2461. 2010 UNITED KINGDOM Click for
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Pathology Latimer et al. Attenuated Virulence and Biofilm Formation in Staphylococcus aureus following Sublethal Exposure to Triclosan Antimicrob Agents Chemother. 2012 Jun; 56(6): 3092–3100. 2012 UNITED KINGDOM Click for
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Neurology Kuntz et al. Stroke-induced brain parenchymal injury drives blood–brain barrier early leakage kinetics: a combined in vivo/in vitro study J Cereb Blood Flow Metab. 2014 Jan; 34(1): 95–107. 2013 FRANCE Click for
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Microbiology Wagley et al. Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli BMC Microbiol. 2014; 14: 262. 2014 UNITED KINGDOM Click for
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Microbiology Du et al. Cellulosic ethanol production by natural bacterial consortia is enhanced by Pseudoxanthomonas taiwanensis Biotechnol Biofuels. 2015; 8: 10. 2015 CHINA Click for
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Pathology Corcionivoschi et al. Virulence characteristics of hcp+Campylobacter jejuni and Campylobacter coli isolates from retail chicken Gut Pathog. 2015; 7: 20. 2015 UNITED KINGDOM Click for
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Cancer Sordi et al. Development of Photodynamic Antimicrobial Chemotherapy (PACT) for Clostridium difficile PLoS One. 2015; 10(8): e0135039. 2015 UNITED KINGDOM Click for
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Microbiology Jameson et al. Anaerobic choline metabolism in microcompartments promotes growth and swarming of P roteus mirabilis Environ Microbiol. 2016 Sep; 18(9): 2886–2898. 2016 UNITED KINGDOM Click for
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Cancer Rodenhizer et al. A 3D engineered tumour for spatial snap-shot analysis of cell metabolism and phenotype in hypoxic gradients Nat Mater. 2016 Feb; 15(2): 227–234. 2016 UNITED KINGDOM Click for
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Dental Forbes et al. Simultaneous Assessment of Acidogenesis-Mitigation and Specific Bacterial Growth-Inhibition by Dentifrices PLoS One. 2016; 11(2): e0149390. 2016 UNITED KINGDOM Click for
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Neurology Doherty et al. Photodynamic killing of cancer cells by a Platinum(II) complex with cyclometallating ligand Sci Rep. 2016; 6: 22668. 2016 UNITED KINGDOM Click for
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Microbiology Hong et al. Survival and Risk Comparison of Campylobacter jejuni on Various Processed Meat Products Int J Environ Res Public Health. 2016 Jun; 13(6): 580. 2016 KOREA Click for
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Dental Ding and Tan The Danger Signal Extracellular ATP Is an Inducer of Fusobacterium nucleatum Biofilm Dispersal Front Cell Infect Microbiol. 2016; 6: 155. 2016 SINGAPORE Click for
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